SNP Profiles of PA 150 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
AACCAACCAAGGGGCCAAGGGGAAAAAA
1._RUQ_1731
AACCAACCAAGGGGCCAAGGGGAAAAAA
2._GC-01-34-2-11
ACCCAGCCAAGGAGCCAAGGGGAAAAAC
3._GC-01-34-2-11
CCCCGGACAAAAGGCCAAGGGGAAAGAC
4._GC-01-34-2-11
CCCCGGACAAAAGGCCAAGGGGAAAGAC
5._RUQ_1731
______GG_______
6._PA_150_[PER]
_____CCGG_AA_____
7._PA_150_[PER]
_____CCGG_AA_____
8._PA_150_[PER]
_____CCGG_AA_____
9._PA_150_[PER]
_____CCGG_AA_____
10._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
11._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
12._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
13._GC-01-034-2-11
ACCCAGCCTTCCAGGGAACCGGTTTTGT
14._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
15._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
16._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
17._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
18._GC-01-034-2-11
CCCCGGACTTTTGGGGAACCGGTTCTGT
19._PA_150_[PER]
_____TTGG_AA_____
20._PA_150_[PER]
_____CCAG_AA_____
21._PA_150_[PER]
_____CCAG_AA_____
22._PA_150_[PER]
_____CCAG_AA_____
23._PA_150_[PER]
_____CCAG_AA_____
24._PA_150_[PER]
_____TTGG_AA_____
25._PA_150_[PER]
_____TTGG_AA_____
26._PA_150_[PER]
_____TTGG_AA_____
27._PA_150_[PER]
_____TTGG_AA_____
28._PA_150_[PER]
_____CTGG_AA_____
29._PA_150_[PER]
_____CTGG_______
30._PA_150_[PER]
_____CTAG_AT_____
31._GC-01-034-2-11
CCACAGACTTCTAGGGATCTAGCTCCGT
 1516171819202122232425262728
_Input profile
AAAAAAAAACGGAAGGACGGCCAGCCAG
1._RUQ_1731
AAAAAAAAACGGAAGGACGGCCAGCCAG
2._GC-01-34-2-11
AAAAAGAAACGGAAGGCCGGCCGGCCAG
3._GC-01-34-2-11
AAAAAGAGACGGAGAGACAACGAAACAA
4._GC-01-34-2-11
AAAAAGAGACGGAGAGACAACGAAACAA
5._RUQ_1731
_TT______AC_GG___
6._PA_150_[PER]
_TTTT_AC_TT_ACCCGGAGGGCT
7._PA_150_[PER]
_TTTT_AC_TT_ACCCGGAGGGCT
8._PA_150_[PER]
_TTTT_AC_TT_ACCCGGAGGGCT
9._PA_150_[PER]
_TTTT_AC_TT_ACCCGGAGGGCT
10._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCT
11._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCT
12._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCT
13._GC-01-034-2-11
TTTTCTTTACGGTTCCCCCCGGGGGGCT
14._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
15._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
16._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
17._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
18._GC-01-034-2-11
TTTTCTTTACGGCTCTACTTCGAAGTTT
19._PA_150_[PER]
_TTCT_AC_CT_ACTTCGAAGTTT
20._PA_150_[PER]
_TTCT_AC_TT_CCCCGGGGGGCT
21._PA_150_[PER]
_TTCT_AC_TT_CCCCGGGGGGCT
22._PA_150_[PER]
_TTCT_AC_TT_CCCCGGGGGGCT
23._PA_150_[PER]
_TTCT_AC_TT_CCCCGGGGGGCT
24._PA_150_[PER]
_TTCT_AC_CT_ACTTCGAAGTTT
25._PA_150_[PER]
_TTCT_AC_CT_ACTTCGAAGTTT
26._PA_150_[PER]
_TTCT_AC_CT_ACTTCGAAGTTT
27._PA_150_[PER]
_TTCT_AC_CT_ACTTCGAAGTTT
28._PA_150_[PER]
_TTTT_AA_TT_ACTTCCAAGGCC
29._PA_150_[PER]
_GTTT_CC___CCTTCGAGGG_
30._PA_150_[PER]
_GTCC_AC_CT_AACTCGAGGTCT
31._GC-01-034-2-11
CTGTCCTTACAGCTCTAACTCGAGGTCT
 2930313233343536373839404142
_Input profile
ATGGAAGGGGGGGGGGCCTTAAGGGGAA
1._RUQ_1731
ATGGAAGGGGGGGGGGCCTTAAGGGGAA
2._GC-01-34-2-11
TTGGACGGAGGGGGGGCCTTATGGGGAA
3._GC-01-34-2-11
TTGGACCGAGGGGGGGCCATATGGGGAA
4._GC-01-34-2-11
TTGGACCGAGGGGGGGCCATATGGGGAA
5._RUQ_1731
____GG______GG__
6._PA_150_[PER]
__AA_GG_CCGG__AA__AA
7._PA_150_[PER]
__AACCGG_CCGG__AA__AA
8._PA_150_[PER]
__AACCGG_CCGG__AA__AA
9._PA_150_[PER]
__AACCGG_CCGG__AA__AA
10._GC-01-034-2-11
AAGGAACCAGGGCCGGGGAAATGGGGAA
11._GC-01-034-2-11
AAGGAACCAGGGCCGGGGAAATGGGGAA
12._GC-01-034-2-11
AAGGAACCAGGGCCGGGGAAATGGGGAA
13._GC-01-034-2-11
AAGGAACCAGGGCCGGGGAAATGGGGAA
14._GC-01-034-2-11
AAGGAACGAGGGCCGGGGATATGGGGAA
15._GC-01-034-2-11
AAGGAACGAGGGCCGGGGATATGGGGAA
16._GC-01-034-2-11
AAGGAACGAGGGCCGGGGATATGGGGAA
17._GC-01-034-2-11
AAGGAACGAGGGCCGGGGATATGGGGAA
18._GC-01-034-2-11
AAGGAACGAGGGCCGGGGATATGGGGAA
19._PA_150_[PER]
__AACGAG_CCGG__AT__AA
20._PA_150_[PER]
__AACCAG_CCGG__AT__AA
21._PA_150_[PER]
__AACCAG_CCGG__AT__AA
22._PA_150_[PER]
__AACCAG_CCGG__AT__AA
23._PA_150_[PER]
__AACCAG_CCGG__AT__AA
24._PA_150_[PER]
__AACGAG_CCGG__AT__AA
25._PA_150_[PER]
__AACGAG_CCGG__AT__AA
26._PA_150_[PER]
__AACGAG_CCGG__AT__AA
27._PA_150_[PER]
__AACGAG_CCGG__AT__AA
28._PA_150_[PER]
__AACCAA_CTGG__TT__AA
29._PA_150_[PER]
__AC_AA_CCCC__TT__AA
30._PA_150_[PER]
__ACCCAA_CCCG__AT__AA
31._GC-01-034-2-11
ATGGACCCAAGGCCCGGTAAATAGGGAA
 4344454647484950515253545556
_Input profile
AAGGGGGGAAGGGGCCACAAAAAGCGAC
1._RUQ_1731
AAGGGGGGAAGGGGCCACAAAAAGCGAC
2._GC-01-34-2-11
AAGGGGGGTTGGGGCCACAAACAGCGCC
3._GC-01-34-2-11
AAGGGGGGATGGAGCCACGGAAAGGGAA
4._GC-01-34-2-11
AAGGGGGGATGGAGCCACGGAAAGGGAA
5._RUQ_1731
________AA___CGAC
6._PA_150_[PER]
___GG____AC_TT_CGAC
7._PA_150_[PER]
___GG____AC_TT_CGAC
8._PA_150_[PER]
___GG____AC_TT_CGAC
9._PA_150_[PER]
___GG____AC_TT_CGAC
10._GC-01-034-2-11
TTGGGGGGTTCC_CCACAAGTAGCGCC
11._GC-01-034-2-11
TTGGGGGGTTCC_CCACAAGTAGCGCC
12._GC-01-034-2-11
TTGGGGGGTTCC_CCACAAGTAGCGCC
13._GC-01-034-2-11
TTGGGGGGTTCC_CCACAAGTAGCGCC
14._GC-01-034-2-11
TTGGGGGGATCC_CCACGGTTAGGGAA
15._GC-01-034-2-11
TTGGGGGGATCC_CCACGGTTAGGGAA
16._GC-01-034-2-11
TTGGGGGGATCC_CCACGGTTAGGGAA
17._GC-01-034-2-11
TTGGGGGGATCC_CCACGGTTAGGGAA
18._GC-01-034-2-11
TTGGGGGGATCC_CCACGGTTAGGGAA
19._PA_150_[PER]
___GG____AC_TT_GGAA
20._PA_150_[PER]
___GG____AC_GT_CGCC
21._PA_150_[PER]
___GG____AC_GT_CGCC
22._PA_150_[PER]
___GG____AC_GT_CGCC
23._PA_150_[PER]
___GG____AC_GT_CGCC
24._PA_150_[PER]
___GG____AC_TT_GGAA
25._PA_150_[PER]
___GG____AC_TT_GGAA
26._PA_150_[PER]
___GG____AC_TT_GGAA
27._PA_150_[PER]
___GG____AC_TT_GGAA
28._PA_150_[PER]
___GG____CC_GT_GGAA
29._PA_150_[PER]
___GG____AC_GG_GGAC
30._PA_150_[PER]
___GG____AC_GT_CCAC
31._GC-01-034-2-11
CTAGAGGGATCG_ACACAGGTAGCCAC
 5758596061626364656667686970
_Input profile
GGAGAAAAAACCAGAAAACCAAAAGGAG
1._RUQ_1731
GGAGAAAAAACCAGAAAACCAAAAGGAG
2._GC-01-34-2-11
GGAGAAAGAACCAGAAAACCAAAACGGG
3._GC-01-34-2-11
GGAGAAGGAAACGGAAAAAAAAAACCGG
4._GC-01-34-2-11
GGAGAAGGAAACGGAAAAAAAAAACCGG
5._RUQ_1731
_CT___GGAG____AATT_
6._PA_150_[PER]
__TT__GG________
7._PA_150_[PER]
__TT__GG________
8._PA_150_[PER]
__TT__GG________
9._PA_150_[PER]
__TT__GG________
10._GC-01-034-2-11
CCCTTTAAAAGGAGTTTTGGTTAACG_
11._GC-01-034-2-11
CCCTTTAAAAGGAGTTTTGGTTAACG_
12._GC-01-034-2-11
CCCTTTAAAAGGAGTTTTGGTTAACG_
13._GC-01-034-2-11
CCCTTTAAAAGGAGTTTTGGTTAACG_
14._GC-01-034-2-11
CCCTTTAAAAGTGGTTTTTTTTAAGG_
15._GC-01-034-2-11
CCCTTTAAAAGTGGTTTTTTTTAAGG_
16._GC-01-034-2-11
CCCTTTAAAAGTGGTTTTTTTTAAGG_
17._GC-01-034-2-11
CCCTTTAAAAGTGGTTTTTTTTAAGG_
18._GC-01-034-2-11
CCCTTTAAAAGTGGTTTTTTTTAAGG_
19._PA_150_[PER]
__TT__GT________
20._PA_150_[PER]
__TT__GG________
21._PA_150_[PER]
__TT__GG________
22._PA_150_[PER]
__TT__GG________
23._PA_150_[PER]
__TT__GG________
24._PA_150_[PER]
__TT__GT________
25._PA_150_[PER]
__TT__GT________
26._PA_150_[PER]
__TT__GT________
27._PA_150_[PER]
__TT__GT________
28._PA_150_[PER]
__CT__GG________
29._PA_150_[PER]
__CT__GG________
30._PA_150_[PER]
__TT__GG________
31._GC-01-034-2-11
CCCTTTAAAAGGAGTTTTGTTTACCGAA
 7172737475767778798081   
_Input profile
CCGGGGGGCCAGCCGGAAGGAGX_XX_XX_X
1._RUQ_1731
CCGGGGGGCCAGCCGGAAGGAGX_XX_XX_X
2._GC-01-34-2-11
CCGGGGGGCCAGCCGGAAAGAGX_XX_XX_X
3._GC-01-34-2-11
CCAGGGGGCCAAGGGGAAAGGGX_XX_XX_X
4._GC-01-34-2-11
CCAGGGGGCCAAGGGGAAAGGGX_XX_XX_X
5._RUQ_1731
GG__GG______AGX_XX_XX_X
6._PA_150_[PER]
GGCC___CTCC_AACCAGX_XX_XX_X
7._PA_150_[PER]
GGCC___CTCC_AACCAGX_XX_XX_X
8._PA_150_[PER]
GGCC___CTCC_AACCAGX_XX_XX_X
9._PA_150_[PER]
GGCC___CTCC_AACCAGX_XX_XX_X
10._GC-01-034-2-11
GGCCCCGGCCCTCCCCAACTAGX_XX_XX_X
11._GC-01-034-2-11
GGCCCCGGCCCTCCCCAACTAGX_XX_XX_X
12._GC-01-034-2-11
GGCCCCGGCCCTCCCCAACTAGX_XX_XX_X
13._GC-01-034-2-11
GGCCCCGGCCCTCCCCAACTAGX_XX_XX_X
14._GC-01-034-2-11
GGCTCCGGCCTTGGCCAACTGGX_XX_XX_X
15._GC-01-034-2-11
GGCTCCGGCCTTGGCCAACTGGX_XX_XX_X
16._GC-01-034-2-11
GGCTCCGGCCTTGGCCAACTGGX_XX_XX_X
17._GC-01-034-2-11
GGCTCCGGCCTTGGCCAACTGGX_XX_XX_X
18._GC-01-034-2-11
GGCTCCGGCCTTGGCCAACTGGX_XX_XX_X
19._PA_150_[PER]
GGCT___TTGG_AACTGGX_XX_XX_X
20._PA_150_[PER]
GGCC___CTCC_AACTAGX_XX_XX_X
21._PA_150_[PER]
GGCC___CTCC_AACTAGX_XX_XX_X
22._PA_150_[PER]
GGCC___CTCC_AACTAGX_XX_XX_X
23._PA_150_[PER]
GGCC___CTCC_AACTAGX_XX_XX_X
24._PA_150_[PER]
GGCT___TTGG_AACTGGX_XX_XX_X
25._PA_150_[PER]
GGCT___TTGG_AACTGGX_XX_XX_X
26._PA_150_[PER]
GGCT___TTGG_AACTGGX_XX_XX_X
27._PA_150_[PER]
GGCT___TTGG_AACTGGX_XX_XX_X
28._PA_150_[PER]
CCCT___CTGG_AACTAGX_XX_XX_X
29._PA_150_[PER]
CCCC___CCCG_AACTAAX_XX_XX_X
30._PA_150_[PER]
CGCT___CTCC_ATCTAGX_XX_XX_X
31._GC-01-034-2-11
CGCTCGAGCCCTCCCCATCTAGX_XX_XX_X

Input profile: PA_150_[PER] PA_150_[PER]_Fld#_173_Plt#_1

 
USDA-TARS, United States of America
Location: Field: 173, Tree: 1
 Mars, 2018

1._PA_150_[PER] RUQ_1731

identical
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._PA_150_[PER] GC-01-34-2-11

88.3 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 7 > FP4
Notes: Brazil_Selections_Poss_grandparent/ (offtype, similar to offtype EET 272, parcel 3311)
 Mars, 2018

3._PA_150_[PER] GC-01-34-2-11

71.6 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 5 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

4._PA_150_[PER] GC-01-34-2-11

71.6 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 14 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

5._PA_150_[PER] RUQ_1731

61.8 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

6._PA_150_[PER]

51.5 %
33 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D679
 Dapeng Zhang, 2016

7._PA_150_[PER]

50 %
34 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P70 1019
 Dapeng Zhang, 2016

8._PA_150_[PER]

50 %
34 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row4 C0183 28
 Dapeng Zhang, 2016

9._PA_150_[PER]

50 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 679
 Dapeng Zhang, 2016

10._PA_150_[PER] GC-01-034-2-11

44.3 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._PA_150_[PER] GC-01-034-2-11

44.3 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._PA_150_[PER] GC-01-034-2-11

44.3 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

13._PA_150_[PER] GC-01-034-2-11

44.3 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._PA_150_[PER] GC-01-034-2-11

42.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._PA_150_[PER] GC-01-034-2-11

42.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._PA_150_[PER] GC-01-034-2-11

42.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

17._PA_150_[PER] GC-01-034-2-11

42.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

18._PA_150_[PER] GC-01-034-2-11

42.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

19._PA_150_[PER]

41.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

20._PA_150_[PER]

41.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

21._PA_150_[PER]

41.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

22._PA_150_[PER]

41.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

23._PA_150_[PER]

41.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

24._PA_150_[PER]

41.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 6
 Dapeng Zhang, 2016

25._PA_150_[PER]

41.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 16
 Dapeng Zhang, 2016

26._PA_150_[PER]

41.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 14 > F
 Dapeng Zhang, 2016

27._PA_150_[PER]

41.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 9 > FP
 Dapeng Zhang, 2016

28._PA_150_[PER]

39.7 %
34 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

29._PA_150_[PER]

38.3 %
30 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria PA 150
 Dapeng Zhang, 2016

30._PA_150_[PER]

38.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 5 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

31._PA_150_[PER] GC-01-034-2-11

38.1 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998